SMTL ID : 5upe.1

Crystal structure of human NAMPT with isoindoline urea inhibitor compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x 8HY: N-{4-[(3-phenylpropyl)carbamoyl]phenyl}-2H-isoindole-2-carboxamide(Non-covalent)

8HY.1: 17 residues within 4Å: Chain A: Y.188, H.191, F.193, R.196, D.219, V.242, A.244, P.273, S.275, T.304, P.307, I.309, R.311, I.351, A.379 Chain B: D.16, Y.18 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:D.219, A:V.242, A:P.273, A:P.307, A:I.309, A:I.351 Hydrogen bonds: A:S.275 Water bridges: A:Y.188, A:H.191, A:D.219, A:D.219, A:R.311 pi-Stacking: A:F.193, A:F.193, B:Y.18, B:Y.18 8HY.2: 18 residues within 4Å: Chain A: D.16, Y.18 Chain B: Y.188, H.191, F.193, R.196, D.219, V.242, A.244, P.273, S.275, T.304, Q.305, P.307, I.309, R.311, I.351, A.379 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.193, B:D.219, B:V.242, B:P.273, B:P.307, B:I.309, B:I.309, B:I.351, B:I.351 Hydrogen bonds: B:S.275 Water bridges: B:Y.188, B:H.191, B:D.219, B:V.242, B:R.311 pi-Stacking: B:F.193, B:F.193, A:Y.18, A:Y.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Curtin, M.L. et al., SAR and characterization of non-substrate isoindoline urea inhibitors of nicotinamide phosphoribosyltransferase (NAMPT). Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-06-28

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

Related Entries With Identical Sequence