SMTL ID : 5upf.1

Crystal structure of human NAMPT with isoindoline urea inhibitor compound 53

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x 8HV: 5-fluoro-N-{4-[1-(2-hydroxy-2-methylpropanoyl)piperidin-4-yl]phenyl}-2H-isoindole-2-carboxamide(Non-covalent)

8HV.1: 16 residues within 4Å: Chain A: Y.188, K.189, H.191, F.193, R.196, D.219, S.241, V.242, A.244, S.275, I.309, R.311, R.349, I.351, A.379 Chain B: Y.18 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.193, A:D.219, A:V.242, A:I.309, A:R.349, A:R.349, A:I.351 Hydrogen bonds: A:K.189, A:S.275 Water bridges: A:D.219, A:S.241, A:R.311 pi-Stacking: A:F.193, A:F.193, B:Y.18, B:Y.18 8HV.2: 17 residues within 4Å: Chain A: Y.18 Chain B: Y.188, K.189, H.191, F.193, R.196, D.219, S.241, V.242, A.244, S.275, I.309, R.311, R.349, I.351, E.376, A.379 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.193, B:D.219, B:V.242, B:I.309, B:R.349, B:R.349, B:I.351 Hydrogen bonds: B:K.189, B:S.275 Water bridges: B:D.219, B:S.241, B:R.311 pi-Stacking: B:F.193, B:F.193, A:Y.18, A:Y.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Curtin, M.L. et al., SAR and characterization of non-substrate isoindoline urea inhibitors of nicotinamide phosphoribosyltransferase (NAMPT). Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-06-28

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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