SMTL ID : 5upm.1

Crystal structure of BhGH81 mutant in complex with laminaro-triose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC.1: 12 residues within 4Å: Chain A: H.432, R.437, N.439, D.440, A.503, D.504, F.509, N.514, W.589 Ligands: GLC-BGC-BGC.2, BGC-BGC.3, PO4.7 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.432, A:H.432, A:N.439, A:D.440, A:D.504, A:D.504, A:N.514

1 x GLC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose

GLC-BGC-BGC.2: 18 residues within 4Å: Chain A: Y.361, K.365, H.432, D.440, F.443, H.444, Q.516, S.517, E.520, W.589, W.590, I.600, L.603, W.638, E.673, E.677, R.678 Ligands: BGC-BGC-BGC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.673, A:R.678, A:R.678, A:D.440, A:H.444, A:Q.516, A:S.517 Water bridges: A:H.432

1 x BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.3: 11 residues within 4Å: Chain A: F.509, D.510, A.511, I.578, W.580, K.583, D.585, A.587, T.588, W.589 Ligands: BGC-BGC-BGC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.580, A:K.583, A:T.588 Water bridges: A:T.588

9 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 5 residues within 4Å: Chain A: E.254, E.533, R.541, H.706, P.707 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.254, A:E.533 Water bridges: A:E.254, A:E.254, A:E.533, A:R.541, A:R.541 Salt bridges: A:R.541, A:H.706 PO4.5: 6 residues within 4Å: Chain A: H.285, H.289, S.553, N.556, E.557, H.563 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.557 Water bridges: A:N.556, A:N.556, A:N.556, A:N.556, A:H.563 Salt bridges: A:H.289, A:H.563 PO4.6: 6 residues within 4Å: Chain A: D.175, W.177, S.187, H.191, H.193, K.227 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.175, A:D.175, A:S.187 Water bridges: A:K.227 Salt bridges: A:H.191, A:H.193, A:K.227 PO4.7: 3 residues within 4Å: Chain A: H.432 Ligands: BGC-BGC-BGC.1, BGC-BGC-BGC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.432 Water bridges: A:S.433, A:S.433 Salt bridges: A:H.432 PO4.8: 4 residues within 4Å: Chain A: H.615, P.616, D.617, Y.618 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.617, A:Y.618 Water bridges: A:R.621 Salt bridges: A:H.615 PO4.9: 4 residues within 4Å: Chain A: M.552, N.556, H.614, P.700 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.556 Water bridges: A:N.556, A:H.614, A:H.615 Salt bridges: A:H.614, A:H.615 PO4.10: 1 residues within 4Å: Chain A: E.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.98, A:E.98, A:E.98 PO4.11: 2 residues within 4Å: Chain A: H.144, D.163 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.163, A:D.163 Water bridges: A:H.144 Salt bridges: A:H.144 PO4.12: 6 residues within 4Å: Chain A: D.337, D.339, R.342, E.659, Y.686, H.690 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.339, A:Y.686, A:Y.686 Water bridges: A:R.342, A:R.342, A:E.659 Salt bridges: A:R.342, A:H.690

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.13: 9 residues within 4Å: Chain A: D.129, Y.130, N.131, Y.134, V.135, R.136, T.149, V.243, R.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.129, A:N.131 EDO.14: 5 residues within 4Å: Chain A: D.249, W.250, T.251, T.260, T.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.260, A:T.262 EDO.15: 3 residues within 4Å: Chain A: E.178, M.179, N.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.179 Water bridges: A:M.179 EDO.16: 4 residues within 4Å: Chain A: R.44, V.45, D.129, Y.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.44, A:D.129 Water bridges: A:T.46, A:Y.130 EDO.17: 5 residues within 4Å: Chain A: P.284, Y.287, G.309, T.310, E.565 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.287, A:T.310 Water bridges: A:E.565, A:E.565 EDO.18: 2 residues within 4Å: Chain A: R.77, E.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.77, A:E.79 EDO.19: 6 residues within 4Å: Chain A: Y.665, G.666, L.667, N.672, I.676, K.682 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.672, A:K.682, A:K.682 Water bridges: A:G.666, A:F.668, A:I.676 EDO.20: 4 residues within 4Å: Chain A: E.95, N.96, R.97, E.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.97, A:E.98 Water bridges: A:E.95, A:R.97 EDO.21: 3 residues within 4Å: Chain A: S.358, K.413, N.414 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.413, A:N.414 Water bridges: A:S.358, A:S.358 EDO.22: 6 residues within 4Å: Chain A: R.136, L.138, Q.145, A.147, E.160, E.162 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.145, A:Y.161 Water bridges: A:R.136, A:R.136, A:Q.145, A:Y.161 EDO.23: 4 residues within 4Å: Chain A: T.38, I.39, Y.40, Q.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.39, A:Q.124

Links

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Citation

Pluvinage, B. et al., The quaternary structure of beta-1,3-glucan contributes to its recognition and hydrolysis by a multimodular family 81 glycoside hydrolase. Structure (2017)

Release Date

2017-06-28

Peptides

BH0236 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BH0236 protein

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