SMTL ID : 5upu.1

Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Mycobacterium tuberculosis in the presence of TBK6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 24 residues within 4Å: Chain A: S.86, M.88, N.191, G.216, S.217, I.218, C.219, T.221, D.252, G.253, G.254, L.255, M.273, L.274, G.275, S.276, Y.299, G.301, M.302, G.303, S.304, E.336, G.337 Ligands: 6Q9.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.86, A:N.191, A:S.217, A:D.252, A:G.254, A:L.255, A:G.275, A:S.276, A:M.302, A:G.303, A:E.336 IMP.3: 24 residues within 4Å: Chain B: S.86, M.88, N.191, G.216, S.217, I.218, C.219, T.221, D.252, G.253, G.254, L.255, M.273, L.274, G.275, S.276, Y.299, G.301, M.302, G.303, S.304, E.336, G.337 Ligands: 6Q9.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.86, B:N.191, B:S.217, B:D.252, B:G.254, B:L.255, B:G.275, B:S.276, B:M.302, B:G.303, B:E.336 IMP.5: 24 residues within 4Å: Chain C: S.86, M.88, N.191, G.216, S.217, I.218, C.219, T.221, D.252, G.253, G.254, L.255, M.273, L.274, G.275, S.276, Y.299, G.301, M.302, G.303, S.304, E.336, G.337 Ligands: 6Q9.6 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.86, C:N.191, C:S.217, C:D.252, C:G.254, C:L.255, C:G.275, C:S.276, C:M.302, C:G.303, C:E.336 IMP.7: 24 residues within 4Å: Chain D: S.86, M.88, N.191, G.216, S.217, I.218, C.219, T.221, D.252, G.253, G.254, L.255, M.273, L.274, G.275, S.276, Y.299, G.301, M.302, G.303, S.304, E.336, G.337 Ligands: 6Q9.8 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.86, D:N.191, D:S.217, D:D.252, D:G.254, D:L.255, D:G.275, D:S.276, D:M.302, D:G.303, D:E.336

4 x 6Q9: ~{N}-(2~{H}-indazol-6-yl)-3,5-dimethyl-1~{H}-pyrazole-4-sulfonamide(Non-covalent)

6Q9.2: 12 residues within 4Å: Chain A: R.111, D.161, A.163, G.212, V.213, G.214, T.221, M.302, G.303, E.336 Chain D: Y.365 Ligands: IMP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.111, A:A.163, A:G.214 6Q9.4: 12 residues within 4Å: Chain B: R.111, D.161, A.163, G.212, V.213, G.214, T.221, M.302, G.303, E.336 Chain C: Y.365 Ligands: IMP.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.111, B:A.163, B:G.214 6Q9.6: 12 residues within 4Å: Chain A: Y.365 Chain C: R.111, D.161, A.163, G.212, V.213, G.214, T.221, M.302, G.303, E.336 Ligands: IMP.5 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.111, C:A.163, C:G.214 6Q9.8: 12 residues within 4Å: Chain B: Y.365 Chain D: R.111, D.161, A.163, G.212, V.213, G.214, T.221, M.302, G.303, E.336 Ligands: IMP.7 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.111, D:A.163, D:G.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Mycobacterium tuberculosis in the presence of TBK6. To Be Published

Release Date

2017-02-22

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase

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