SMTL ID : 5uq9.3 (3 other biounits)

Crystal structure of 6-phosphogluconate dehydrogenase with ((4R,5R)-5-(hydroxycarbamoyl)-2,2-dimethyl-1,3-dioxolan-4-yl)methyl dihydrogen phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x 8HS: [(4R,5R)-5-(hydroxycarbamoyl)-2,2-dimethyl-1,3-dioxolan-4-yl]methyl dihydrogen phosphate(Non-covalent)

8HS.1: 11 residues within 4Å: Chain A: N.109, N.194, E.197, Y.198, G.265, K.267, R.294 Chain B: R.453, F.456, G.457, H.459 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Salt bridges: B:R.453, B:H.459, A:R.294 Hydrophobic interactions: A:K.267 Hydrogen bonds: A:N.109, A:Y.198, A:Y.198, A:K.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y. et al., Functional Genomics Reveals Synthetic Lethality between Phosphogluconate Dehydrogenase and Oxidative Phosphorylation. Cell Rep (2019)

Release Date

2018-08-22

Peptides

6-phosphogluconate dehydrogenase, decarboxylating: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

6-phosphogluconate dehydrogenase, decarboxylating

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