SMTL ID : 5uqk.1

Clostridium difficile toxin A (TcdA) glucosyltransferase domain in complex with U2F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x U2F: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE(Non-covalent)

U2F.1: 25 residues within 4Å: Chain A: V.100, W.101, I.102, N.138, L.264, A.265, A.266, S.268, D.269, R.272, Y.283, D.285, V.286, D.287, I.382, N.383, Q.384, T.464, I.465, S.468, G.469, P.470, E.514, S.517 Ligands: MN.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.264 Hydrogen bonds: A:V.100, A:I.102, A:I.102, A:N.138, A:S.268, A:R.272, A:R.272, A:V.286, A:N.383, A:S.517 Water bridges: A:V.100, A:D.287, A:D.287, A:Q.384 pi-Stacking: A:W.101 Halogen bonds: A:Q.384

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.287, Q.384, E.514, S.517 Ligands: U2F.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.287, A:E.514, H2O.1, H2O.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvin, J.W. et al., Clostridium difficile toxin glucosyltransferase domains in complex with a non-hydrolyzable UDP-glucose analogue. J. Struct. Biol. (2017)

Release Date

2017-05-10

Peptides

Toxin A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toxin A

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