SMTL ID : 5uql.1

Clostridium difficile toxin A (TcdA) glucosyltransferase domain in complex with U2F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.287, Q.384, E.514 Ligands: U2F.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.287, A:E.514, H2O.1, H2O.4

1 x U2F: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE(Non-covalent)

U2F.2: 29 residues within 4Å: Chain A: V.100, W.101, I.102, G.103, N.138, L.264, A.265, A.266, S.268, D.269, R.272, Y.283, D.285, V.286, D.287, I.382, N.383, Q.384, T.464, I.465, S.468, G.469, P.470, E.514, S.517, L.518, W.519, S.520 Ligands: MN.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.264, A:L.518 Hydrogen bonds: A:V.100, A:I.102, A:I.102, A:N.138, A:S.268, A:D.269, A:R.272, A:R.272, A:Y.283, A:V.286, A:N.383, A:S.517, A:L.518, A:W.519 Water bridges: A:V.100, A:D.285, A:D.287, A:Q.384, A:Q.513, A:N.516 pi-Stacking: A:W.101 Halogen bonds: A:Q.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvin, J.W. et al., Clostridium difficile toxin glucosyltransferase domains in complex with a non-hydrolyzable UDP-glucose analogue. J. Struct. Biol. (2017)

Release Date

2017-05-10

Peptides

Toxin A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toxin A

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