SMTL ID : 5uqp.1

The crystal structure of cupin protein from Rhodococcus jostii RHA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.66, H.68, E.72, H.106 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.66, A:H.68, A:E.72, A:H.106, H2O.2, H2O.2 ZN.6: 4 residues within 4Å: Chain B: D.66, H.68, E.72, H.106 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.66, B:H.68, B:E.72, B:H.106, H2O.3, H2O.4 ZN.7: 4 residues within 4Å: Chain C: D.66, H.68, E.72, H.106 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.66, C:H.68, C:E.72, C:H.106, H2O.5, H2O.5 ZN.12: 4 residues within 4Å: Chain D: D.66, H.68, E.72, H.106 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.66, D:H.68, D:E.72, D:H.106, H2O.6, H2O.7

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.78, G.79 Ligands: SO4.5 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.63, A.64 Chain B: S.31, A.33 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.29, S.31 Chain B: T.63, A.64 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: S.78, G.79 Ligands: SO4.11 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: T.63, A.64 Chain D: S.31, A.33 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain C: R.29, S.31 Chain D: T.63, A.64 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Ligands: CL.2 No protein-ligand interaction detected (PLIP) SO4.11: 1 residues within 4Å: Ligands: CL.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of cupin protein from Rhodococcus jostii RHA1. To Be Published

Release Date

2017-02-22

Peptides

Cupin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Cupin