SMTL ID : 5uqt.2 (1 other biounit)

Clostridium difficile Toxin B (TcdB) glucosyltransferase domain co-crystallized with apigenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.306, D.308, E.535, S.538 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.308, A:S.538

1 x AGI: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one(Non-covalent)

AGI.2: 6 residues within 4Å: Chain A: A.459, N.460, A.461, G.464, R.465, M.468 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.461 Hydrogen bonds: A:A.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvin, J.W. et al., Clostridium difficile toxin glucosyltransferase domains in complex with a non-hydrolyzable UDP-glucose analogue. J. Struct. Biol. (2017)

Release Date

2017-05-10

Peptides

Toxin B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Toxin B

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