SMTL ID : 5uqu.1

Crystal structure of mutant 2-methylcitrate synthase (mcsAG352A) from Aspergillus fumigatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.290, W.291, A.294, K.298, Y.311, R.320 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.311 Water bridges: A:W.291, A:Y.311, A:R.320 Salt bridges: A:R.290, A:K.298, A:R.320 SO4.3: 8 residues within 4Å: Chain A: R.430 Chain B: H.245, N.249, H.281, H.327, R.336, R.410 Ligands: COA.5 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Water bridges: B:V.250, B:H.281, B:H.281, B:R.336, B:R.336 Salt bridges: B:H.245, B:H.281, B:H.327, B:R.336, B:R.410 Hydrogen bonds: A:R.430 SO4.4: 2 residues within 4Å: Chain B: S.107, T.108 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.108, B:T.108 Water bridges: B:S.107, B:S.107, B:N.109

1 x OAA: OXALOACETATE ION(Non-covalent)

OAA.2: 7 residues within 4Å: Chain A: H.245, N.249, H.281, H.327, R.336, R.410 Chain B: R.430 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:N.249 Hydrogen bonds: A:R.410, A:R.410 Water bridges: A:H.281 Salt bridges: A:H.245, A:H.245, A:H.327, A:H.327, A:R.336, A:R.410, B:R.430

1 x COA: COENZYME A(Non-covalent)

COA.5: 23 residues within 4Å: Chain A: K.168, P.427, I.428 Chain B: R.50, L.280, H.281, A.284, L.316, V.321, V.322, P.323, G.324, Y.325, G.326, H.327, A.328, L.370, K.375, T.376, K.377, N.382, D.384 Ligands: SO4.3 23 PLIP interactions: 18 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.280, A:I.428 Hydrogen bonds: B:L.280, B:V.322, B:V.322, B:G.324, B:Y.325, B:Y.325, B:T.376, B:K.377, B:N.382, A:K.168 Water bridges: B:R.50, B:R.50, B:H.327, B:H.327, B:R.331, B:K.375, A:I.428, A:I.428 Salt bridges: B:R.50, B:K.375, A:K.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlachter, C.R. et al., Comparative studies of Aspergillus fumigatus 2-methylcitrate synthase and human citrate synthase. Biol.Chem. (2019)

Release Date

2018-02-14

Peptides

2-methylcitrate synthase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-methylcitrate synthase, mitochondrial

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