SMTL ID : 5ur4.1 (1 other biounit)

1.5 A Crystal structure of PYR1 bound to Pyrabactin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

2 x PYV: 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide(Non-covalent)

PYV.1: 15 residues within 4Å: Chain A: K.59, I.62, V.81, V.83, A.89, S.92, E.94, F.108, I.110, H.115, L.117, Y.120, F.159, V.163, V.164 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.89, A:H.115, A:Y.120 Hydrogen bonds: A:S.92 Water bridges: A:Y.120, A:N.167 PYV.7: 15 residues within 4Å: Chain B: K.59, I.62, V.81, V.83, A.89, S.92, E.94, F.108, I.110, H.115, L.117, Y.120, F.159, V.163, V.164 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.89, B:H.115, B:Y.120 Hydrogen bonds: B:S.92 Water bridges: B:N.167

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: S.66, V.67, E.68, T.78, R.79, D.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.68, A:T.78, A:D.80 Water bridges: A:E.68 GOL.3: 3 residues within 4Å: Chain A: T.91, G.113, E.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.91, A:G.113 Water bridges: A:G.113 GOL.4: 7 residues within 4Å: Chain A: S.3, E.4, L.5, R.10, L.33, H.34, A.35 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.5, A:R.10, A:R.10, A:L.33 Water bridges: A:A.35 GOL.5: 5 residues within 4Å: Chain A: F.20, I.98, D.100, R.103, V.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.100, A:R.103, A:R.103 GOL.6: 1 residues within 4Å: Chain A: R.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.103 Water bridges: A:R.103 GOL.8: 6 residues within 4Å: Chain B: S.66, V.67, E.68, T.78, R.79, D.80 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.68, B:D.80, B:D.80 Water bridges: B:T.78 GOL.9: 3 residues within 4Å: Chain B: T.91, G.113, E.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.113 Water bridges: B:G.113, B:E.114 GOL.10: 7 residues within 4Å: Chain B: S.3, E.4, L.5, R.10, L.33, H.34, A.35 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.5, B:R.10, B:R.10, B:L.33 Water bridges: B:A.35 GOL.11: 5 residues within 4Å: Chain B: F.20, I.98, D.100, R.103, V.105 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.103, B:R.103 GOL.12: 1 residues within 4Å: Chain B: R.103 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.103 Water bridges: B:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peterson, F.C. et al., 1.5 A Crystal structure of PYR1 bound to Pyrabactin. To Be Published

Release Date

2018-01-24

Peptides

Abscisic acid receptor PYR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Abscisic acid receptor PYR1

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