SMTL ID : 5ury.1

Crystal structure of Frizzled 5 CRD in complex with PAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x NAG- FUC- FUC- FUC: alpha-L-fucopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-FUC-FUC.1: 4 residues within 4Å: Chain A: E.23, R.30, N.35 Chain B: Q.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.30, A:N.35 Water bridges: A:N.35

2 x PAM: PALMITOLEIC ACID(Non-covalent)

PAM.2: 6 residues within 4Å: Chain A: Q.57, F.58, P.60, L.61, Y.111, F.113 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.58, A:L.61, A:L.61, A:Y.111, A:Y.111, A:F.113 Hydrogen bonds: A:Q.57 PAM.3: 6 residues within 4Å: Chain B: Q.57, F.58, P.60, L.61, Y.111, F.113 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.58, B:L.61, B:Y.111, B:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nile, A.H. et al., Unsaturated fatty acyl recognition by Frizzled receptors mediates dimerization upon Wnt ligand binding. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-05-10

Peptides

Frizzled-5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Frizzled-5

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