SMTL ID : 5us8.1

2.15 Angstrom Resolution Crystal Structure of Argininosuccinate Synthase from Bordetella pertussis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 5 residues within 4Å: Chain A: V.255, Y.257, A.258, D.259, E.262 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.257, A:A.258, A:D.259, A:D.259 EPE.3: 4 residues within 4Å: Chain B: Y.257, A.258, D.259, E.262 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.258, B:D.259 EPE.4: 8 residues within 4Å: Chain B: G.24, L.25, Q.50, D.52, E.53, R.172, Y.186, S.189 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.25, B:D.52, B:R.172, B:Y.186, B:S.189 Salt bridges: B:D.52 EPE.7: 5 residues within 4Å: Chain C: V.255, Y.257, A.258, D.259, E.262 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.257, C:A.258, C:D.259, C:D.259 EPE.9: 4 residues within 4Å: Chain D: Y.257, A.258, D.259, E.262 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.258, D:D.259 EPE.10: 8 residues within 4Å: Chain D: G.24, L.25, Q.50, D.52, E.53, R.172, Y.186, S.189 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:L.25, D:D.52, D:R.172, D:Y.186, D:S.189 Salt bridges: D:D.52

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 2 residues within 4Å: Chain A: E.238, R.273 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.273 PGE.8: 2 residues within 4Å: Chain C: E.238, R.273 1 PLIP interactions: 1 interactions with chain C Water bridges: C:R.273

2 x ADN: ADENOSINE(Non-covalent)

ADN.5: 10 residues within 4Å: Chain A: E.321, R.324, E.325, R.328, K.329 Chain B: E.321, R.324, E.325, R.328, K.329 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.324, B:E.325, A:E.321, A:E.325 Water bridges: A:E.321, A:R.328 ADN.11: 10 residues within 4Å: Chain C: E.321, R.324, E.325, R.328, K.329 Chain D: E.321, R.324, E.325, R.328, K.329 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:E.321, C:E.325, D:R.324, D:E.325 Water bridges: C:E.321, C:R.328

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.15 Angstrom Resolution Crystal Structure of Argininosuccinate Synthase from Bordetella pertussis. To Be Published

Release Date

2017-03-01

Peptides

Argininosuccinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Argininosuccinate synthase

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