SMTL ID : 5usd.1 (1 other biounit)

Crystal structure of MccF-like protein (BA_5613) in the complex with aspartyl sulfamoyl adenylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x DSZ: 5'-O-(L-alpha-aspartylsulfamoyl)adenosine(Non-covalent)

DSZ.1: 16 residues within 4Å: Chain A: C.21, I.25, V.26, N.30, L.85, G.86, G.87, Y.88, Y.112, S.113, H.135, S.137, D.173, W.175, Y.176, H.301 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.25, A:G.86, A:Y.88, A:Y.88, A:W.175 Water bridges: A:G.87, A:Y.112, A:Y.112, A:Y.112, A:D.114, A:S.138, A:H.301, B:S.238 Salt bridges: A:H.135, B:K.241 pi-Stacking: A:Y.176, A:Y.176 DSZ.3: 18 residues within 4Å: Chain A: K.241 Chain B: C.21, I.25, V.26, N.30, L.85, G.86, G.87, Y.88, Y.112, S.113, H.135, S.137, D.173, W.175, Y.176, Q.268, H.301 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.25, B:G.86, B:Y.88, B:Y.88, B:W.175 Water bridges: B:G.87, B:D.114, B:S.138 Salt bridges: B:H.135, A:K.241 pi-Stacking: B:Y.176

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: G.144, L.145, E.146, Y.147, T.148, S.167, E.168, T.169, F.184, P.304 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.146, A:Y.147, A:E.168, A:T.169, A:T.169, A:T.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of MccF-like protein (BA_5613) in the complex with aspartyl sulfamoyl adenylate. To Be Published

Release Date

2017-03-15

Peptides

Peptidase S66: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Peptidase S66

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