SMTL ID : 5usf.1 (1 other biounit)

Leishmania donovani tyrosyl-tRNA synthetase in complex with nanobody and inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YSA: 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE(Non-covalent)

YSA.1: 23 residues within 4Å: Chain A: Y.40, D.41, G.42, F.43, E.44, A.52, Q.53, W.74, A.76, F.79, I.152, Y.167, Q.171, D.174, L.185, G.186, D.188, Q.189, H.214, H.215, M.216, L.217, M.227 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.40, A:A.76, A:Q.171, A:L.185 Hydrogen bonds: A:D.41, A:E.44, A:E.44, A:Q.53, A:Y.167, A:D.174, A:D.174, A:G.186, A:D.188, A:Q.189, A:L.217, A:L.217 Water bridges: A:K.57 pi-Stacking: A:F.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barros-Alvarez, X. et al., Leishmania donovani tyrosyl-tRNA synthetase structure in complex with a tyrosyl adenylate analog and comparisons with human and protozoan counterparts. Biochimie (2017)

Release Date

2017-05-17

Peptides

Tyrosyl-tRNA synthetase, putative: A
Immunoglobulin heavy chain variable region: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Tyrosyl-tRNA synthetase, putative

Immunoglobulin heavy chain variable region

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