SMTL ID : 5ut5.1

JAK2 JH2 in complex with GLPG0634

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: N.138, C.140, R.180, W.183 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.138, A:N.138 Water bridges: A:R.180, A:R.180, A:R.180 GOL.2: 5 residues within 4Å: Chain A: V.82, G.84, D.85, E.86, N.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.86, A:N.87 Water bridges: A:N.87 GOL.3: 3 residues within 4Å: Chain A: I.147, R.148, F.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.148 GOL.4: 3 residues within 4Å: Chain A: F.12, F.25, V.47 No protein-ligand interaction detected (PLIP)

1 x 2HB: N-(5-{4-[(1,1-dioxidothiomorpholin-4-yl)methyl]phenyl}[1,2,4]triazolo[1,5-a]pyridin-2-yl)cyclopropanecarboxamide(Non-covalent)

2HB.5: 15 residues within 4Å: Chain A: L.16, Q.18, I.24, L.44, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, T.101, K.142, L.145 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.24, A:I.24, A:L.44, A:F.93, A:L.145 Hydrogen bonds: A:V.94, A:V.94 Water bridges: A:S.98

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 6 residues within 4Å: Chain A: F.2, H.3, S.67, N.77, Y.78, G.79 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.2 Hydrogen bonds: A:H.3

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 3 residues within 4Å: Chain A: A.239, A.246, N.247 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newton, A.S. et al., JAK2 JH2 Fluorescence Polarization Assay and Crystal Structures for Complexes with Three Small Molecules. ACS Med Chem Lett (2017)

Release Date

2017-06-07

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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