SMTL ID : 5utn.2 (1 other biounit)

Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x 8MA: 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-[(4-fluorophenyl)amino]benzoic acid(Non-covalent)

8MA.1: 19 residues within 4Å: Chain A: I.41, F.73, L.76, A.77, L.80, S.84, V.86, A.87, I.102, L.103, W.106, L.107, F.186, S.188, P.189, L.190, E.191, T.192 Ligands: 8MA.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.76, A:L.76, A:L.80, A:L.80, A:V.86, A:A.87, A:I.102, A:L.107, A:P.189, A:L.190, A:T.192 Hydrogen bonds: A:L.190, A:E.191, A:T.192, A:T.192 Water bridges: A:T.192 pi-Stacking: A:W.106, A:W.106 8MA.2: 7 residues within 4Å: Chain A: I.41, E.42, L.44, L.107, A.136, L.137 Ligands: 8MA.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.41, A:L.44, A:A.136, A:L.137, A:L.137

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: H.85, R.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acker, T.M. et al., Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor. To Be Published

Release Date

2017-03-29

Peptides

ORF 17: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ORF 17

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