SMTL ID : 5uu1.1

Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to BI-D1870

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 7DZ: (7S)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one(Non-covalent)

7DZ.1: 17 residues within 4Å: Chain A: I.24, G.27, I.32, V.48, K.50, E.62, Y.66, P.90, M.110, E.111, R.112, L.113, G.114, A.159, N.160, L.162, A.174 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.32, A:V.48, A:M.110, A:L.113 Hydrogen bonds: A:E.62, A:E.111, A:L.113 Water bridges: A:D.116 Halogen bonds: A:Y.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations. Sci Rep (2017)

Release Date

2017-03-01

Peptides

Serine/threonine-protein kinase VRK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase VRK2

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