SMTL ID : 5uut.1 (1 other biounit)

N-myristoyltransferase 1 (NMT) bound to myristoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 34 residues within 4Å: Chain A: Y.12, Q.13, F.14, W.15, N.74, Y.75, V.76, I.140, N.141, F.142, L.143, C.144, V.145, R.150, S.151, K.152, R.153, V.154, A.155, P.156, I.159, T.163, V.166, H.167, I.171, F.172, Q.173, A.174, Y.176, T.177, A.178, V.180, L.182, Y.374 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:W.15, A:W.15, A:Y.75, A:V.76, A:I.140, A:I.140, A:L.143, A:V.145, A:I.159, A:V.166, A:A.174, A:Y.176, A:Y.176, A:Y.176, A:Y.374 Hydrogen bonds: A:Q.13, A:F.14, A:W.15, A:Y.75, A:F.142, A:L.143, A:L.143, A:V.145, A:R.150, A:R.150, A:S.151, A:R.153, A:V.154, A:A.155 Water bridges: A:R.10, A:R.150, A:R.150, A:K.152, A:K.152 Salt bridges: A:R.153, A:R.153

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 5 residues within 4Å: Chain A: T.17, Q.18, E.34, K.37, R.160 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.17, A:Q.18 Water bridges: A:E.34, A:Y.374, A:Y.374 Salt bridges: A:K.37, A:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Blocking Myristoylation of Src Inhibits Its Kinase Activity and Suppresses Prostate Cancer Progression. Cancer Res. (2017)

Release Date

2018-01-17

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

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