SMTL ID : 5uuu.1

Design, Synthesis, and Evaluation of the First Selective and Potent G-protein-Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x QRW: 3-({[4-methyl-5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl]methyl}amino)-N-[2-(trifluoromethyl)benzyl]benzamide(Non-covalent)

QRW.1: 22 residues within 4Å: Chain A: I.206, R.208, G.209, G.210, F.211, G.212, E.213, V.214, A.227, K.229, L.231, L.244, A.245, E.248, V.264, D.281, M.283, L.333, S.343, D.344, G.346, L.347 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.211, A:V.214, A:V.214, A:L.244, A:V.264, A:L.333, A:L.347 Hydrogen bonds: A:F.211, A:G.212, A:K.229, A:M.283, A:S.343, A:D.344 Water bridges: A:D.344

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: Y.365, K.392, G.396, H.397, S.398, R.401 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.398 Water bridges: A:K.392, A:K.392 Salt bridges: A:K.392, A:R.401 SO4.3: 3 residues within 4Å: Chain A: S.201, H.203, R.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.201 Salt bridges: A:H.203, A:R.218

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 7 residues within 4Å: Chain A: D.281, L.282, M.283, N.284, D.335, E.336, R.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.282, A:N.284, A:N.284, A:E.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okawa, T. et al., Design, Synthesis, and Evaluation of the Highly Selective and Potent G-Protein-Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure. J. Med. Chem. (2017)

Release Date

2017-07-26

Peptides

Beta-adrenergic receptor kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-adrenergic receptor kinase 1

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