SMTL ID : 5uv6.1

Crystal structure of human Opioid Binding Protein/Cell Adhesion Molecule Like (OPCML)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: N.35, R.36, L.40, R.52, V.53, I.67, Y.73, D.74, Y.78 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 8 residues within 4Å: Chain B: N.35, L.40, R.52, V.53, I.67, Y.73, D.74, Y.78 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.258, S.273, T.275 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.258, A:S.273, A:T.275 NAG.4: 5 residues within 4Å: Chain A: F.222, E.225, T.260, V.262, N.271 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.222, A:T.260, A:V.262 Hydrogen bonds: A:E.225, A:T.260, A:N.271 NAG.5: 4 residues within 4Å: Chain B: F.222, E.225, V.262, N.271 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.222, B:V.262 Hydrogen bonds: B:E.225, B:E.225, B:N.271 NAG.6: 3 residues within 4Å: Chain B: N.258, S.273, T.275 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.258, B:S.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birtley, J.R. et al., Inactivating mutations and X-ray crystal structure of the tumor suppressor OPCML reveal cancer-associated functions. Nat Commun (2019)

Release Date

2018-03-21

Peptides

Opioid-binding protein/cell adhesion molecule: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Opioid-binding protein/cell adhesion molecule