SMTL ID : 5uwc.1

Cytokine-receptor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 7 residues within 4Å: Chain A: A.37, N.61, T.63, R.65, S.72, T.73, W.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.65

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 5 residues within 4Å: Chain A: K.197, C.198, N.199, T.201, H.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.198, A:N.199

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 7 residues within 4Å: Chain A: L.133, H.134, F.148, D.149, D.150, R.153, L.154 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.149, A:D.149, A:D.150, A:R.153, A:R.153 Salt bridges: A:H.134, A:H.134, A:R.153 CIT.6: 7 residues within 4Å: Chain A: R.218, R.236, R.258 Chain B: D.10, I.13, T.14, K.17 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.258 Hydrogen bonds: A:R.218, A:R.258 Water bridges: A:R.258, A:E.261 Salt bridges: A:R.218, A:R.236, A:R.236, A:R.258, B:K.17

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 2 residues within 4Å: Chain A: W.94, I.188 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.92, A:T.92 pi-Stacking: A:W.94, A:W.94

1 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.5: 5 residues within 4Å: Chain A: W.94, H.96, S.102, K.136, R.147 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.94, A:S.102, A:R.147 Water bridges: A:K.136 Salt bridges: A:H.96, A:H.96, A:K.136, A:K.136, A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Broughton, S.E. et al., A dual role for the N-terminal domain of the IL-3 receptor in cell signalling. Nat Commun (2018)

Release Date

2018-02-07

Peptides

Interleukin-3 receptor subunit alpha: A
Interleukin-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
I

Interleukin-3 receptor subunit alpha

Interleukin-3

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