SMTL ID : 5uwl.2 (1 other biounit)

Matrix metalloproteinase-13 complexed with selective inhibitor compound (S)-17a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.120, H.124, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.120, A:H.124, A:H.130

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.26, D.101, E.103 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.26, A:D.101, A:D.101, A:E.103 CA.3: 5 residues within 4Å: Chain A: D.60, N.92, Y.93, G.94, D.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.60, A:N.92, A:G.94, A:D.96

1 x 8OJ: (S)-N-(3-methyl-1-(methylamino)-1-oxobutan-2-yl)-5-(4-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)phenyl)furan-2-carboxamide(Non-covalent)

8OJ.4: 16 residues within 4Å: Chain A: L.82, L.83, Y.112, L.116, V.117, H.120, E.121, G.135, L.137, F.139, P.140, I.141, Y.142, T.143, F.150, P.153 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.83, A:V.117, A:H.120, A:F.150, A:P.153 Hydrogen bonds: A:L.83, A:P.140, A:Y.142, A:T.143 Water bridges: A:T.143 pi-Stacking: A:H.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, J.Y. et al., Structure-Based Design and Synthesis of Potent and Selective Matrix Metalloproteinase 13 Inhibitors. J. Med. Chem. (2017)

Release Date

2017-07-12

Peptides

Collagenase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Collagenase 3

Related Entries With Identical Sequence