SMTL ID : 5ux4.1 (1 other biounit)

Crystal Structure of Rat Cathepsin D with (5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro- 7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3- c]pyridine-5,4'-[1,3]oxazol]-2'-amine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.133, I.172, V.205 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.257

1 x 3UT: (5S)-3-(5,6-dihydro-2H-pyran-3-yl)-1-fluoro-7-(2-fluoropyridin-3-yl)spiro[chromeno[2,3-c]pyridine-5,4'-[1,3]oxazol]-2'-amine(Non-covalent)

3UT.3: 18 residues within 4Å: Chain A: A.76, Q.77, V.94, D.96, G.98, S.99, I.139, Y.141, L.146, F.189, I.192, I.200, V.202, Y.263, D.289, G.291, T.292, S.293 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.139, A:F.189, A:V.202 Hydrogen bonds: A:D.96, A:Y.263, A:T.292 pi-Stacking: A:Y.141, A:F.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Low, J.D. et al., Development of 2-aminooxazoline 3-azaxanthene beta-amyloid cleaving enzyme (BACE) inhibitors with improved selectivity against Cathepsin D. Medchemcomm (2017)

Release Date

2018-06-13

Peptides

Cathepsin D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin D

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