SMTL ID : 5uxi.1

Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)

DDQ.1: 13 residues within 4Å: Chain A: V.29, G.32, E.33, A.36, Y.40, E.61, Q.111, E.116, F.118, A.119, E.145 Ligands: DDQ.2, DDQ.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.29, A:A.36, A:F.118, A:A.119 Hydrogen bonds: A:Y.40, A:Y.40, A:Q.111 Salt bridges: A:E.61, A:E.116, A:E.145 DDQ.2: 11 residues within 4Å: Chain A: F.68, E.116, A.119, I.120, V.141, V.142, E.145, H.148, N.150 Ligands: DDQ.1, DDQ.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.68, A:I.120, A:V.141, A:V.142, A:E.145 Hydrogen bonds: A:H.148 Salt bridges: A:E.116 pi-Cation interactions: A:Y.146 DDQ.3: 15 residues within 4Å: Chain A: Y.22, I.25, N.26, V.29, F.68, C.71, F.118, A.122, Y.126, A.134, T.138, M.194, L.199 Ligands: DDQ.1, DDQ.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.25, A:V.29, A:F.118, A:Y.126, A:Y.126, A:Y.126, A:L.199 Hydrogen bonds: A:Y.22, A:Y.22, A:T.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, D.K. et al., Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme. To Be Published

Release Date

2018-02-28

Peptides

Aldehyde decarbonylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldehyde decarbonylase