SMTL ID : 5uxy.1

The crystal structure of a DegV family protein from Eubacterium eligens loaded with heptadecanoic acid to 1.80 Angstrom resolution (ALTERNATIVE REFINEMENT OF PDB 3FDJ with HEPTADECANOIC acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: K.160, A.179, V.181, I.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.184, A:I.184

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 3 residues within 4Å: Chain A: I.184, K.201, R.203 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.201, A:R.203

1 x X90: heptadecanoic acid(Non-covalent)

X90.3: 18 residues within 4Å: Chain A: L.27, T.60, A.61, I.83, M.87, S.88, G.89, K.116, S.117, T.118, L.155, R.170, A.190, G.194, T.195, L.196, Y.265, I.272 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.27, A:I.83, A:L.155, A:A.190, A:Y.265, A:Y.265, A:Y.265, A:I.272 Hydrogen bonds: A:S.88, A:G.89 Water bridges: A:R.170 Salt bridges: A:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., The crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with palmitic acid to 1.83 Angstroem resolution. J.Biol.Chem. (2018)

Release Date

2018-11-21

Peptides

DegV family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DegV family protein

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