SMTL ID : 5uyz.1

Structure of Human T-complex protein 1 subunit epsilon (CCT5) mutant His147Arg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-16-mer

Ligands

16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, G.423, L.462, C.493, L.494, V.506, E.508, K.513 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.53, A:D.104, A:T.106, A:T.107, A:G.108, A:G.422, A:G.423, A:C.493, A:E.508, A:K.513 ADP.3: 18 residues within 4Å: Chain B: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.53, B:T.106, B:T.107, B:T.107, B:G.108, B:G.422, B:G.423, B:C.493, B:E.508, B:Q.516 ADP.5: 16 residues within 4Å: Chain C: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.6 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.51, C:G.53, C:D.73, C:T.106, C:T.107, C:T.107, C:G.108, C:G.422, C:G.423, C:C.493, C:E.508 ADP.7: 14 residues within 4Å: Chain D: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, C.493, L.494, V.506, E.508 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:S.51, D:G.53, D:D.73, D:T.106, D:T.107, D:T.107, D:G.108, D:G.422, D:G.423, D:C.493, D:E.508, D:K.513 ADP.8: 20 residues within 4Å: Chain E: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, G.423, L.462, C.493, L.494, V.506, E.508, K.513 Ligands: MG.9 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.53, E:D.104, E:T.106, E:T.107, E:G.108, E:G.422, E:G.423, E:C.493, E:E.508, E:K.513 ADP.10: 18 residues within 4Å: Chain F: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.11 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.53, F:T.106, F:T.107, F:T.107, F:G.108, F:G.422, F:G.423, F:C.493, F:E.508, F:Q.516 ADP.12: 16 residues within 4Å: Chain G: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.13 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:S.51, G:G.53, G:D.73, G:T.106, G:T.107, G:T.107, G:G.108, G:G.422, G:G.423, G:C.493, G:E.508 ADP.14: 14 residues within 4Å: Chain H: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, C.493, L.494, V.506, E.508 12 PLIP interactions: 12 interactions with chain H Hydrogen bonds: H:S.51, H:G.53, H:D.73, H:T.106, H:T.107, H:T.107, H:G.108, H:G.422, H:G.423, H:C.493, H:E.508, H:K.513 ADP.15: 20 residues within 4Å: Chain I: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, G.423, L.462, C.493, L.494, V.506, E.508, K.513 Ligands: MG.16 11 PLIP interactions: 11 interactions with chain I Hydrogen bonds: I:G.53, I:D.104, I:D.104, I:T.106, I:T.107, I:G.108, I:G.422, I:G.423, I:C.493, I:E.508, I:K.513 ADP.17: 18 residues within 4Å: Chain J: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.18 10 PLIP interactions: 10 interactions with chain J Hydrogen bonds: J:G.53, J:T.106, J:T.107, J:T.107, J:G.108, J:G.422, J:G.423, J:C.493, J:E.508, J:Q.516 ADP.19: 16 residues within 4Å: Chain K: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.20 11 PLIP interactions: 11 interactions with chain K Hydrogen bonds: K:S.51, K:G.53, K:D.73, K:T.106, K:T.107, K:T.107, K:G.108, K:G.422, K:G.423, K:C.493, K:E.508 ADP.21: 14 residues within 4Å: Chain L: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, C.493, L.494, V.506, E.508 12 PLIP interactions: 12 interactions with chain L Hydrogen bonds: L:S.51, L:G.53, L:D.73, L:T.106, L:T.107, L:T.107, L:G.108, L:G.422, L:G.423, L:C.493, L:E.508, L:K.513 ADP.22: 20 residues within 4Å: Chain M: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, G.423, L.462, C.493, L.494, V.506, E.508, K.513 Ligands: MG.23 10 PLIP interactions: 10 interactions with chain M Hydrogen bonds: M:G.53, M:D.104, M:T.106, M:T.107, M:G.108, M:G.422, M:G.423, M:C.493, M:E.508, M:K.513 ADP.24: 18 residues within 4Å: Chain N: S.51, L.52, G.53, P.54, D.73, D.104, G.105, T.106, T.107, G.108, G.421, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.25 10 PLIP interactions: 10 interactions with chain N Hydrogen bonds: N:G.53, N:T.106, N:T.107, N:T.107, N:G.108, N:G.422, N:G.423, N:C.493, N:E.508, N:Q.516 ADP.26: 16 residues within 4Å: Chain O: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, L.462, C.493, L.494, V.506, E.508 Ligands: MG.27 11 PLIP interactions: 11 interactions with chain O Hydrogen bonds: O:S.51, O:G.53, O:D.73, O:T.106, O:T.107, O:T.107, O:G.108, O:G.422, O:G.423, O:C.493, O:E.508 ADP.28: 14 residues within 4Å: Chain P: S.51, L.52, G.53, D.73, D.104, G.105, T.106, T.107, G.108, G.422, C.493, L.494, V.506, E.508 12 PLIP interactions: 12 interactions with chain P Hydrogen bonds: P:S.51, P:G.53, P:D.73, P:T.106, P:T.107, P:T.107, P:G.108, P:G.422, P:G.423, P:C.493, P:E.508, P:K.513

12 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.73, D.104, D.404 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: D.104 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain C: D.104 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain E: D.73, D.104, D.404 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain F: D.104 Ligands: ADP.10 No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain G: D.104 Ligands: ADP.12 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain I: D.73, D.104, D.404 Ligands: ADP.15 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain J: D.104 Ligands: ADP.17 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain K: D.104 Ligands: ADP.19 No protein-ligand interaction detected (PLIP) MG.23: 4 residues within 4Å: Chain M: D.73, D.104, D.404 Ligands: ADP.22 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain N: D.104 Ligands: ADP.24 No protein-ligand interaction detected (PLIP) MG.27: 2 residues within 4Å: Chain O: D.104 Ligands: ADP.26 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, J.H. et al., Structure of the human TRiC/CCT Subunit 5 associated with hereditary sensory neuropathy. Sci Rep (2017)

Release Date

2017-07-05

Peptides

T-complex protein 1 subunit epsilon: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M
A

N
B

O
C

P
D

T-complex protein 1 subunit epsilon