SMTL ID : 5uz8.1

Crystal Structure of Mouse Cadherin-23 EC22-24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.165, N.167 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: V.125, F.126 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: D.183, H.184, R.212 Ligand excluded by PLIP

7 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: N.217, C.219, D.249, D.251, N.255, D.299 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.219, A:D.249, A:D.251, A:N.255, A:D.299 CA.5: 7 residues within 4Å: Chain A: E.127, E.180, D.215, V.216, D.218, D.251 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.215, A:V.216, A:D.218, A:D.251 CA.6: 6 residues within 4Å: Chain A: E.127, D.178, E.180, D.218 Ligands: CA.5, GSH.11 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.127, A:D.178, A:E.180, A:D.218, H2O.9 CA.7: 5 residues within 4Å: Chain A: N.3, D.36, D.38, N.42, D.90 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.3, A:D.36, A:N.42, A:D.90, H2O.12 CA.8: 6 residues within 4Å: Chain A: N.110, N.112, D.142, D.144, F.148, D.193 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.112, A:D.142, A:D.144, A:F.148, A:D.193 CA.9: 8 residues within 4Å: Chain A: E.21, E.77, D.108, I.109, D.111, N.112, D.144 Ligands: CA.10 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.21, A:E.77, A:E.77, A:D.108, A:D.144 CA.10: 5 residues within 4Å: Chain A: E.21, D.75, E.77, D.111 Ligands: CA.9 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.21, A:D.75, A:E.77, A:D.111, H2O.12, H2O.12

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.11: 7 residues within 4Å: Chain A: D.178, E.180, K.181, D.218, C.219, Q.250 Ligands: CA.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.178, A:D.178 Water bridges: A:S.176, A:S.176 Salt bridges: A:K.181, A:K.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2018-02-28

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23