SMTL ID : 5uzu.1

Immune evasion by a Staphylococcal Peroxidase Inhibitor that blocks myeloperoxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: H.22, S.25, Y.26 Chain B: N.189, N.192, L.194, L.196, A.198, V.199, Q.201 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.200

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain B: N.225, P.355, W.369, L.373 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 2 residues within 4Å: Chain B: N.317, S.319 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.317

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain B: D.96, T.168, F.170, D.172, S.174 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.96, B:D.96, B:T.168, B:F.170, B:S.174

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain B: H.95, D.96, L.167, S.174, M.175 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: R.31, W.32, N.326, V.327, W.436 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: N.392, V.481, L.485, R.490, V.491 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Jong, N.W.M. et al., Immune evasion by a staphylococcal inhibitor of myeloperoxidase. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-07-26

Peptides

Uncharacterised protein: A
Myeloperoxidase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Uncharacterised protein

Myeloperoxidase