SMTL ID : 5uzy.1

Crystal structure of N97A mutant of human macrophage migration inhibitory factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-trimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.2: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.68, B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.3: 2 residues within 4Å: Chain B: G.65, K.66 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.66 Water bridges: B:I.67, B:Q.71 Salt bridges: B:K.66 SO4.6: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.69, C:A.70, C:Q.71, C:Q.71

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 5 residues within 4Å: Chain A: Y.95 Chain B: P.1, H.62, S.63, I.64 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.95 Hydrogen bonds: B:I.64 IPA.5: 3 residues within 4Å: Chain B: Q.35, Y.36, W.108 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.36, B:W.108 IPA.8: 4 residues within 4Å: Chain C: G.17, S.20, E.21, Q.24 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.24

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain C: P.1, K.32, I.64, F.113 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:P.1, C:P.1, C:I.64 Water bridges: C:K.32, C:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pantouris, G. et al., Nanosecond Dynamics Regulate the MIF-Induced Activity of CD74. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-02-28

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor