SMTL ID : 5v0z.1

Crystal structure of Galactoside O-acetyltransferase complex with CoA (P32 space group).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

homo-trimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: K.168, D.169, I.170, C.181, K.182, V.183 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.168, A:K.168, A:V.183 EDO.2: 7 residues within 4Å: Chain A: E.13, T.116, K.130, A.131, G.132, P.150, G.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.13, A:P.150 EDO.17: 6 residues within 4Å: Chain B: K.168, D.169, I.170, C.181, K.182, V.183 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.183 Water bridges: B:K.168, B:K.168 EDO.18: 4 residues within 4Å: Chain A: L.119, N.120 Chain B: I.187, D.188 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:L.119, A:N.120, B:K.186 Hydrogen bonds: B:D.188 EDO.34: 7 residues within 4Å: Chain C: K.168, D.169, I.170, C.181, K.182, V.183 Ligands: PO4.35 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.168, C:K.168, C:V.183 Water bridges: C:V.183

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: K.168, K.182 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.168, A:K.182 PO4.35: 3 residues within 4Å: Chain C: K.168, K.182 Ligands: EDO.34 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.168, C:K.182

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: N.87, G.107, P.108 Ligands: COA.6 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: P.118, L.119 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain B: N.87, G.107, P.108 Ligands: COA.22 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain B: P.118, L.119 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain C: N.87, G.107, P.108 Ligands: COA.21 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain C: P.118, L.119 Ligand excluded by PLIP

3 x COA: COENZYME A(Non-covalent)

COA.6: 22 residues within 4Å: Chain A: G.107, P.108, W.141, F.142, G.143, G.144, V.159, G.161, A.162, L.175, V.177, R.185 Chain C: Y.113, A.115, L.149, P.150, V.165, T.167, K.168, N.179, P.180 Ligands: CL.4 15 PLIP interactions: 4 interactions with chain C, 11 interactions with chain A Hydrogen bonds: C:T.167, A:G.144, A:A.162, A:A.162 Water bridges: C:K.182, A:G.143, A:G.178, A:G.178 Salt bridges: C:K.168, C:K.182, A:R.185 Hydrophobic interactions: A:W.141, A:W.141, A:V.159, A:L.175 COA.21: 23 residues within 4Å: Chain B: M.93, Y.113, A.115, L.149, P.150, V.165, T.167, K.168, N.179, P.180 Chain C: G.107, W.141, F.142, G.143, G.144, V.159, G.161, A.162, L.175, V.177, V.184, R.185 Ligands: CL.36 14 PLIP interactions: 5 interactions with chain B, 9 interactions with chain C Hydrogen bonds: B:T.167, C:G.144, C:A.162, C:A.162 Water bridges: B:N.179, B:K.182, C:G.178, C:R.185, C:R.185 Salt bridges: B:K.168, B:K.182, C:R.185 Hydrophobic interactions: C:W.141, C:V.159 COA.22: 22 residues within 4Å: Chain A: Y.113, A.115, L.149, P.150, T.167, K.168, N.179, P.180, K.182 Chain B: G.107, P.108, W.141, F.142, G.143, G.144, V.159, G.161, A.162, L.175, V.177, R.185 Ligands: CL.19 16 PLIP interactions: 11 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:W.141, B:V.159, B:L.175 Hydrogen bonds: B:G.144, B:A.162, B:A.162, A:T.167 Water bridges: B:G.143, B:G.178, B:R.185, B:R.185, A:N.179, A:K.182 Salt bridges: B:R.185, A:K.168, A:K.182

31 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.7: 10 residues within 4Å: Chain A: I.68, P.69, T.88 Chain C: N.39 Ligands: UNX.14, UNX.40, UNX.41, UNX.42, UNX.43, UNX.44 Ligand excluded by PLIP UNX.8: 9 residues within 4Å: Chain A: K.32, C.35, F.36 Chain B: P.43 Ligands: UNX.9, UNX.10, UNX.11, UNX.12, UNX.32 Ligand excluded by PLIP UNX.9: 11 residues within 4Å: Chain A: K.32, C.35, D.71 Ligands: UNX.8, UNX.10, UNX.11, UNX.12, UNX.30, UNX.31, UNX.32, UNX.33 Ligand excluded by PLIP UNX.10: 9 residues within 4Å: Chain A: D.71 Chain B: I.68 Ligands: UNX.8, UNX.9, UNX.11, UNX.12, UNX.31, UNX.32, UNX.33 Ligand excluded by PLIP UNX.11: 10 residues within 4Å: Chain A: C.35, N.39, F.70, D.71 Ligands: UNX.8, UNX.9, UNX.10, UNX.12, UNX.32, UNX.33 Ligand excluded by PLIP UNX.12: 10 residues within 4Å: Chain A: C.35, F.36, N.39 Ligands: UNX.8, UNX.9, UNX.10, UNX.11, UNX.13, UNX.32, UNX.33 Ligand excluded by PLIP UNX.13: 6 residues within 4Å: Chain A: F.36, N.39, H.40 Ligands: UNX.12, UNX.32, UNX.33 Ligand excluded by PLIP UNX.14: 9 residues within 4Å: Chain A: S.67, I.68, T.88 Chain C: D.71 Ligands: UNX.7, UNX.15, UNX.42, UNX.43, UNX.44 Ligand excluded by PLIP UNX.15: 7 residues within 4Å: Chain A: S.67, I.68 Ligands: UNX.14, UNX.16, UNX.39, UNX.42, UNX.43 Ligand excluded by PLIP UNX.16: 6 residues within 4Å: Chain A: P.43, R.49, I.66, S.67, I.68 Ligands: UNX.15 Ligand excluded by PLIP UNX.23: 6 residues within 4Å: Chain B: P.43, R.49, S.67, I.68 Ligands: UNX.30, UNX.31 Ligand excluded by PLIP UNX.24: 8 residues within 4Å: Chain B: K.32, C.35, F.36 Chain C: P.43 Ligands: UNX.25, UNX.26, UNX.28, UNX.46 Ligand excluded by PLIP UNX.25: 9 residues within 4Å: Chain C: I.68 Ligands: UNX.24, UNX.26, UNX.27, UNX.28, UNX.29, UNX.38, UNX.45, UNX.46 Ligand excluded by PLIP UNX.26: 10 residues within 4Å: Chain B: K.32, C.35, D.71 Ligands: UNX.24, UNX.25, UNX.27, UNX.28, UNX.38, UNX.45, UNX.46 Ligand excluded by PLIP UNX.27: 8 residues within 4Å: Chain B: N.39, F.70, D.71 Ligands: UNX.25, UNX.26, UNX.28, UNX.38, UNX.45 Ligand excluded by PLIP UNX.28: 9 residues within 4Å: Chain B: C.35, F.36, N.39 Ligands: UNX.24, UNX.25, UNX.26, UNX.27, UNX.29, UNX.38 Ligand excluded by PLIP UNX.29: 7 residues within 4Å: Chain B: F.36, N.39, H.40 Chain C: I.68 Ligands: UNX.25, UNX.28, UNX.38 Ligand excluded by PLIP UNX.30: 6 residues within 4Å: Chain B: S.67, I.68 Ligands: UNX.9, UNX.23, UNX.31, UNX.32 Ligand excluded by PLIP UNX.31: 10 residues within 4Å: Chain A: D.71 Chain B: S.67, I.68, T.88 Ligands: UNX.9, UNX.10, UNX.23, UNX.30, UNX.32, UNX.33 Ligand excluded by PLIP UNX.32: 11 residues within 4Å: Chain B: P.43, I.68 Ligands: UNX.8, UNX.9, UNX.10, UNX.11, UNX.12, UNX.13, UNX.30, UNX.31, UNX.33 Ligand excluded by PLIP UNX.33: 11 residues within 4Å: Chain A: N.39 Chain B: I.68, P.69, T.88 Ligands: UNX.9, UNX.10, UNX.11, UNX.12, UNX.13, UNX.31, UNX.32 Ligand excluded by PLIP UNX.38: 10 residues within 4Å: Chain B: N.39 Chain C: I.68, P.69, T.88 Ligands: UNX.25, UNX.26, UNX.27, UNX.28, UNX.29, UNX.45 Ligand excluded by PLIP UNX.39: 7 residues within 4Å: Chain A: P.43 Chain C: K.32, F.36 Ligands: UNX.15, UNX.41, UNX.42, UNX.43 Ligand excluded by PLIP UNX.40: 5 residues within 4Å: Chain C: N.39, H.40 Ligands: UNX.7, UNX.41, UNX.42 Ligand excluded by PLIP UNX.41: 9 residues within 4Å: Chain C: C.35, F.36, N.39 Ligands: UNX.7, UNX.39, UNX.40, UNX.42, UNX.43, UNX.44 Ligand excluded by PLIP UNX.42: 9 residues within 4Å: Chain A: I.68 Ligands: UNX.7, UNX.14, UNX.15, UNX.39, UNX.40, UNX.41, UNX.43, UNX.44 Ligand excluded by PLIP UNX.43: 10 residues within 4Å: Chain C: K.32, C.35, D.71 Ligands: UNX.7, UNX.14, UNX.15, UNX.39, UNX.41, UNX.42, UNX.44 Ligand excluded by PLIP UNX.44: 9 residues within 4Å: Chain C: C.35, N.39, F.70, D.71 Ligands: UNX.7, UNX.14, UNX.41, UNX.42, UNX.43 Ligand excluded by PLIP UNX.45: 9 residues within 4Å: Chain B: D.71 Chain C: S.67, I.68, T.88 Ligands: UNX.25, UNX.26, UNX.27, UNX.38, UNX.46 Ligand excluded by PLIP UNX.46: 7 residues within 4Å: Chain C: S.67, I.68 Ligands: UNX.24, UNX.25, UNX.26, UNX.45, UNX.47 Ligand excluded by PLIP UNX.47: 5 residues within 4Å: Chain C: P.43, R.49, S.67, I.68 Ligands: UNX.46 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czub, M.P. et al., Crystal structure of Galactoside O-acetyltransferase complex with CoA (P32 space group). to be published

Release Date

2017-03-15

Peptides

Putative acetyltransferase SACOL2570: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Putative acetyltransferase SACOL2570

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