SMTL ID : 5v18.1

Structure of PHD2 in complex with 1,2,4-Triazolo-[1,5-a]pyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.39 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.39 SO4.2: 2 residues within 4Å: Chain A: R.219, R.234 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.219, A:R.234

1 x 8UY: 4-([1,2,4]triazolo[1,5-a]pyridin-5-yl)benzonitrile(Non-covalent)

8UY.3: 14 residues within 4Å: Chain A: Y.126, Y.133, H.136, I.150, Y.152, N.154, L.166, P.181, H.197, V.199, R.206, Y.207, A.208 Ligands: FE2.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.126, A:Y.133, A:Y.152, A:V.199, A:A.208 Hydrogen bonds: A:N.154 pi-Stacking: A:Y.126

1 x FE2: FE (II) ION(Non-covalent)

FE2.4: 4 residues within 4Å: Chain A: H.136, D.138, H.197 Ligands: 8UY.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.136, A:D.138, A:H.197, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, S. et al., 1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction. J. Med. Chem. (2017)

Release Date

2017-06-21

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1