SMTL ID : 5v1b.1

Structure of PHD1 in complex with 1,2,4-Triazolo-[1,5-a]pyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.57, I.77, W.79, G.229, Q.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.79, A:Q.230 Salt bridges: A:R.57 SO4.2: 2 residues within 4Å: Chain A: R.171, P.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.25, A:R.171

1 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: H.134, D.136, H.195 Ligands: 8UY.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.195, H2O.1

1 x 8UY: 4-([1,2,4]triazolo[1,5-a]pyridin-5-yl)benzonitrile(Non-covalent)

8UY.4: 13 residues within 4Å: Chain A: Y.124, Y.131, H.134, I.148, Y.150, N.152, P.179, H.195, V.197, R.204, Y.205, A.206 Ligands: FE.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.124, A:Y.131, A:Y.131, A:Y.150, A:V.197, A:A.206 Hydrogen bonds: A:N.152 Water bridges: A:R.204 pi-Stacking: A:Y.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, S. et al., 1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction. J. Med. Chem. (2017)

Release Date

2017-06-21

Peptides

Egl nine homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 2