SMTL ID : 5v21.1

Crystal structure of human SETD2 SET-domain in complex with H3K36M peptide and SAM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.102, C.115, C.119, C.125 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.102, A:C.115, A:C.119, A:C.125 ZN.2: 5 residues within 4Å: Chain A: C.85, C.87, C.102, C.106 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.85, A:C.87, A:C.102, A:C.106 ZN.3: 5 residues within 4Å: Chain A: C.217, C.264, C.266, C.271, R.272 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.217, A:C.264, A:C.266, A:C.271

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 19 residues within 4Å: Chain A: K.146, G.147, W.148, I.188, H.189, Y.190, Y.191, R.211, F.212, M.213, N.214, H.215, Y.252, Q.262, K.263, C.264, F.265, C.266, L.275 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:W.148, A:I.188, A:Y.190, A:Y.190, A:Y.191, A:N.214, A:N.214, A:H.215, A:H.215, A:Q.262, A:F.265 Salt bridges: A:H.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Molecular basis for the role of oncogenic histone mutations in modulating H3K36 methylation. Sci Rep (2017)

Release Date

2017-03-22

Peptides

Histone-lysine N-methyltransferase SETD2: A
Histone H3K36M peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETD2

Histone H3K36M peptide

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