SMTL ID : 5v2a.1

Crystal structure of Fab H7.167 in complex with influenza virus hemagglutinin from A/Shanghai/02/2013 (H7N9)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.66 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain D: N.28, S.31 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 2 residues within 4Å: Chain H: N.28, S.31 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 2 residues within 4Å: Chain L: N.28, S.31 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.28, T.309 Chain B: L.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.28, A:T.309 NAG.3: 1 residues within 4Å: Chain A: N.231 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain E: N.28, T.309 Chain F: L.52 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.28, E:T.309 NAG.6: 1 residues within 4Å: Chain E: N.231 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain I: N.28, T.309 Chain J: L.52 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:N.28, I:T.309 NAG.9: 1 residues within 4Å: Chain I: N.231 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thornburg, N.J. et al., H7N9 influenza virus neutralizing antibodies that possess few somatic mutations. J. Clin. Invest. (2016)

Release Date

2017-04-05

Peptides

Hemagglutinin: AEI
Hemagglutinin: BFJ
Light chain (kappa) of H7.167 antibody: CGK
Heavy chain of H7.167 antibody: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
L

G
L

K
L

D
H

H
H

L
H

Hemagglutinin

Hemagglutinin

Light chain (kappa) of H7.167 antibody

Heavy chain of H7.167 antibody

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