SMTL ID : 5v3d.1

Crystal structure of fosfomycin resistance protein from Klebsiella pneumoniae with bound fosfomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.67, E.113 Chain B: H.7 Ligands: FCN.3 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: B:H.7, A:H.67, A:E.113, FCN.3, FCN.3 MN.4: 5 residues within 4Å: Chain A: H.7, T.9 Chain B: H.67, E.113 Ligands: FCN.5 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: A:H.7, B:H.67, B:E.113, FCN.5

2 x K: POTASSIUM ION(Non-covalent)

K.2: 7 residues within 4Å: Chain A: N.95, S.97, E.98, G.99, S.101, H.115, R.122 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.97, A:S.97, A:G.99, A:S.101, H2O.3 K.7: 8 residues within 4Å: Chain B: N.95, S.97, E.98, G.99, S.101, Y.103, H.115, R.122 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.97, B:S.97, B:G.99, B:S.101, H2O.8

2 x FCN: FOSFOMYCIN(Non-covalent)

FCN.3: 12 residues within 4Å: Chain A: Y.65, H.67, K.93, S.97, Y.103, E.113, R.122 Chain B: H.7, T.9, W.46, C.48 Ligands: MN.1 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.65, A:Y.65, A:K.93, A:S.97, A:Y.103, A:R.122, A:R.122 Water bridges: A:S.97, A:S.101 Hydrophobic interactions: B:W.46 FCN.5: 12 residues within 4Å: Chain A: H.7, T.9, W.46, C.48 Chain B: Y.65, H.67, S.97, Y.103, E.113, R.122 Ligands: MN.4, PEG.6 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.65, B:S.97, B:R.122, B:R.122, A:T.9 Water bridges: B:K.93, B:S.101 Hydrophobic interactions: A:W.46

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: Y.39 Chain B: Y.65, R.122 Ligands: FCN.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.39, B:Y.65, B:R.122

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: L.45 Chain B: L.5, L.45 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.5 Water bridges: A:L.5, A:L.5, B:L.5, B:D.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klontz, E.H. et al., Structure and Dynamics of FosA-Mediated Fosfomycin Resistance in Klebsiella pneumoniae and Escherichia coli. Antimicrob. Agents Chemother. (2017)

Release Date

2017-08-30

Peptides

Fosfomycin resistance protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fosfomycin resistance protein

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