SMTL ID : 5v3g.1

PRDM9-allele-C ZnF8-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-trimer

Ligands

13 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.10, C.13, H.26, H.30 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.10, C:C.13, C:H.26, C:H.30 ZN.2: 4 residues within 4Å: Chain C: C.38, C.41, H.54, H.58 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.38, C:C.41, C:H.54, C:H.58 ZN.3: 4 residues within 4Å: Chain C: C.66, C.69, H.82, H.86 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.66, C:C.69, C:H.82, C:H.86 ZN.4: 4 residues within 4Å: Chain C: C.94, C.97, H.110, H.114 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.94, C:C.97, C:H.110, C:H.114 ZN.5: 4 residues within 4Å: Chain C: C.122, C.125, H.138, H.142 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.122, C:C.125, C:H.138, C:H.142 ZN.6: 4 residues within 4Å: Chain C: C.150, C.153, H.166, H.170 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.150, C:C.153, C:H.166, C:H.170 ZN.7: 4 residues within 4Å: Chain F: C.10, C.13, H.26, H.30 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.10, F:C.13, F:H.26, F:H.30 ZN.8: 4 residues within 4Å: Chain F: C.38, C.41, H.54, H.58 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.38, F:C.41, F:H.54, F:H.58 ZN.9: 4 residues within 4Å: Chain F: C.66, C.69, H.82, H.86 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.66, F:C.69, F:H.82, F:H.86 ZN.10: 4 residues within 4Å: Chain F: C.94, C.97, H.110, H.114 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.94, F:C.97, F:H.110, F:H.114 ZN.11: 4 residues within 4Å: Chain F: C.122, C.125, H.138, H.142 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.122, F:C.125, F:H.138, F:H.142 ZN.12: 5 residues within 4Å: Chain F: C.150, E.152, C.153, H.166, H.170 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.150, F:C.153, F:H.166, F:H.170 ZN.13: 4 residues within 4Å: Chain G: C.10, C.13, H.26, H.30 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.10, G:C.13, G:H.26, G:H.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A. et al., Structural basis of human PR/SET domain 9 (PRDM9) allele C-specific recognition of its cognate DNA sequence. J. Biol. Chem. (2017)

Release Date

2017-08-23

Peptides

PR domain zinc finger protein 9: CFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

F
A

G
G

PR domain zinc finger protein 9