SMTL ID : 5v3j.2 (1 other biounit)

mouseZFP568-ZnF1-10 in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.8, C.11, H.24, H.28 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.8, C:C.11, C:H.24, C:H.28 ZN.2: 4 residues within 4Å: Chain C: C.36, C.39, H.52, H.56 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.36, C:C.39, C:H.52, C:H.56 ZN.3: 4 residues within 4Å: Chain C: C.64, C.67, H.80, H.84 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.64, C:C.67, C:H.80, C:H.84 ZN.4: 4 residues within 4Å: Chain C: C.92, C.95, H.108, H.112 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.92, C:C.95, C:H.108, C:H.112 ZN.5: 4 residues within 4Å: Chain C: C.120, C.123, H.136, H.140 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.120, C:C.123, C:H.136, C:H.140 ZN.6: 4 residues within 4Å: Chain C: C.148, C.151, H.164, H.168 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.148, C:C.151, C:H.164, C:H.168 ZN.7: 4 residues within 4Å: Chain C: C.176, C.179, H.192, H.196 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.176, C:C.179, C:H.192, C:H.196 ZN.8: 4 residues within 4Å: Chain C: C.204, C.207, H.220, H.224 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.204, C:C.207, C:H.220, C:H.224 ZN.9: 4 residues within 4Å: Chain C: C.232, C.235, H.248, H.252 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.232, C:C.235, C:H.248, C:H.252 ZN.10: 4 residues within 4Å: Chain C: C.260, C.263, H.276, H.280 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.260, C:C.263, C:H.276, C:H.280

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.11: 6 residues within 4Å: Chain C: E.119, C.120, K.121, C.123, D.124 Ligands: MG.12 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:C.123, C:D.124

1 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 4 residues within 4Å: Chain C: C.120, C.123, D.124 Ligands: TRS.11 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.120, C:C.123, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A. et al., DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell (2018)

Release Date

2018-03-07

Peptides

Zinc finger protein 568: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
F

Zinc finger protein 568

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