SMTL ID : 5v4a.1

A New Glycosyltransferase (DUF1792) from Streptococcus sanguinis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 19 residues within 4Å: Chain A: R.27, Y.43, S.115, R.116, G.148, S.151, P.172, S.173, R.174, N.175, A.176, M.199, L.200, G.201, K.205, D.220, G.222, H.223, H.245 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:Y.43, A:S.115, A:G.148, A:T.150, A:P.172, A:A.176, A:L.200, A:G.201, A:G.201, A:H.223 Water bridges: A:R.27, A:Y.43, A:T.150, A:Y.177, A:K.205, A:K.205, A:G.222, A:H.223 Salt bridges: A:R.27, A:R.27, A:R.116, A:K.205, A:H.223, A:H.223 pi-Stacking: A:Y.43 UDP.2: 18 residues within 4Å: Chain B: R.27, Y.43, S.115, R.116, G.148, S.151, P.172, S.173, R.174, N.175, A.176, M.199, L.200, G.201, K.205, G.222, H.223, H.245 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:Y.43 Hydrogen bonds: B:S.115, B:G.148, B:P.172, B:A.176, B:G.201, B:H.223 Water bridges: B:R.27, B:Y.43, B:T.150, B:T.150, B:S.151, B:S.173, B:Y.177, B:G.222, B:G.222, B:H.223, B:H.223 Salt bridges: B:R.27, B:R.27, B:R.116, B:K.205, B:H.223, B:H.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., A New Glycosyltransferase (DUF1792) from Streptococcus sanguinis. To Be Published

Release Date

2017-09-13

Peptides

GLYCOSYLTRANSFERASE (DUF1792): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLYCOSYLTRANSFERASE (DUF1792)