SMTL ID : 5v4e.4 (3 other biounits)

Engineered human IgG Fc domain glyco801 (Fc801)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 13 residues within 4Å: Chain A: F.21, F.23, T.40, V.42, V.44, D.45, Y.76, N.77, T.79, R.81 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.76 Hydrogen bonds: A:R.81, A:T.40

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 13 residues within 4Å: Chain B: F.21, F.23, T.40, V.42, V.44, D.45, Q.75, Y.76, N.77, R.81 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.H. et al., IgG Fc domains that bind C1q but not effector Fc gamma receptors delineate the importance of complement-mediated effector functions. Nat. Immunol. (2017)

Release Date

2017-06-21

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Ig gamma-1 chain C region

Related Entries With Identical Sequence