SMTL ID : 5v4v.2 (1 other biounit)

Saccharomyces cerevisiae Old Yellow Enzyme 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 26 residues within 4Å: Chain A: P.35, P.36, L.37, T.38, R.39, E.72, G.73, Q.115, H.192, N.195, R.244, V.289, V.293, P.296, A.324, G.325, N.326, Y.327, Y.347, G.348, R.349, I.352, R.372, F.375, Y.376 Ligands: NCA.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.37, A:R.349, A:F.375, A:F.375, A:Y.376 Hydrogen bonds: A:T.38, A:T.38, A:G.73, A:Q.115, A:Q.115, A:R.244, A:R.244, A:N.326, A:G.348, A:R.349, A:R.349 Water bridges: A:G.325, A:Y.327, A:R.349, A:R.349, A:F.350 Salt bridges: A:R.349

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 10 residues within 4Å: Chain A: T.38, W.117, H.192, N.195, Y.197, R.244, F.251, P.296, Y.376 Ligands: FMN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.117, A:Y.197 Hydrogen bonds: A:N.195 Water bridges: A:N.195

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: Q.60, Q.63, P.355, T.384, D.385, Y.386, P.387, T.388, E.391 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.63, A:Y.386, A:T.388, A:E.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, J.D., Saccharomyces cerevisiae Old Yellow Enzyme 3. To Be Published

Release Date

2018-03-14

Peptides

NADPH dehydrogenase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NADPH dehydrogenase 3

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