SMTL ID : 5v4x.1

Human glucokinase in complex with novel pyrazole activator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 9 residues within 4Å: Chain A: N.197, D.198, T.199, I.218, G.222, C.223, N.224, E.249, E.283 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.197, A:N.197, A:N.224, A:E.249 Water bridges: A:D.198, A:G.222, A:G.222, A:G.222, A:Q.280, A:Q.280

1 x 8WJ: (2S)-3-cyclohexyl-2-[4-(cyclopentylsulfonyl)-2-oxopyridin-1(2H)-yl]-N-(1,3-thiazol-2-yl)propanamide(Non-covalent)

8WJ.2: 16 residues within 4Å: Chain A: Y.54, V.55, R.56, S.57, T.58, P.59, E.60, W.92, M.203, I.204, Y.207, C.213, M.228, V.448, K.451, K.452 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.55, A:W.92, A:I.204, A:Y.207, A:Y.207, A:Y.207 Hydrogen bonds: A:R.56, A:R.56 pi-Stacking: A:Y.207

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 4 residues within 4Å: Chain A: T.53, V.196, N.197, K.452 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: P.5, L.6, E.10 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.326, H.409 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheruvallath, Z.S. et al., Discovery of potent and orally active 1,4-disubstituted indazoles as novel allosteric glucokinase activators. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-05-31

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase

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