SMTL ID : 5v54.1

Crystal structure of 5-HT1B receptor in complex with methiothepin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

homo-dimer

Ligands

2 x 89F: 1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine(Non-covalent)

89F.1: 16 residues within 4Å: Chain A: W.89, L.90, D.93, I.94, C.97, T.98, I.101, V.165, S.176, T.177, A.180, W.332, F.335, F.336, T.360, Y.364 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.101, A:A.180, A:W.332, A:F.336 Hydrogen bonds: A:Y.364 Salt bridges: A:D.93, A:D.93 pi-Stacking: A:W.332, A:W.332, A:F.336 89F.2: 17 residues within 4Å: Chain B: W.89, L.90, D.93, I.94, C.97, T.98, I.101, V.165, S.176, T.177, A.180, W.332, F.335, F.336, S.339, T.360, Y.364 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.101, B:A.180, B:W.332, B:F.335, B:F.336 Salt bridges: B:D.93, B:D.93 pi-Stacking: B:W.332, B:W.332, B:F.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, W.C. et al., A common antagonistic mechanism for class A GPCRs revealed by the structure of the human 5-HT1B serotonin receptor bound to an antagonist. Cell Discov (2018)

Release Date

2018-02-07

Peptides

5-hydroxytryptamine receptor 1B,OB-1 fused 5-HT1b receptor,5-hydroxytryptamine receptor 1B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 1B,OB-1 fused 5-HT1b receptor,5-hydroxytryptamine receptor 1B