SMTL ID : 5v5h.1

OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: Q.21, E.83, T.107, L.108, S.111, F.138 Chain B: R.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.21, A:E.83, A:T.107 Water bridges: A:S.111

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.61, H.64 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.61, A:H.64

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 10 residues within 4Å: Chain A: R.85, L.86, V.87, G.88 Chain B: K.54, D.66, Q.76, L.77, E.78, D.79 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.66, B:Q.76, B:D.79, B:D.79 Water bridges: B:K.54, B:K.54, B:K.54, A:R.85 Salt bridges: B:K.54, B:D.66, B:D.66, B:D.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Potent and selective inhibition of pathogenic viruses by engineered ubiquitin variants. PLoS Pathog. (2017)

Release Date

2017-05-10

Peptides

RNA-directed RNA polymerase L: A
Ubiquitin variant CC.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-directed RNA polymerase L

Ubiquitin variant CC.2

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