SMTL ID : 5v5w.2 (1 other biounit)

Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.27, V.28, R.86, R.104 Chain C: R.213 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.86 Salt bridges: A:R.104, C:R.213 SO4.2: 1 residues within 4Å: Chain A: R.52 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.52 SO4.3: 4 residues within 4Å: Chain A: S.192, T.211, R.213 Chain B: K.20 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.192 Salt bridges: A:R.213, B:K.20 SO4.4: 5 residues within 4Å: Chain A: R.213 Chain B: R.27, V.28, R.86, R.104 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.213, B:R.104 Hydrogen bonds: B:R.86 SO4.5: 1 residues within 4Å: Chain B: R.52 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.52 SO4.6: 4 residues within 4Å: Chain B: S.192, T.211, R.213 Chain C: K.20 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.192 Salt bridges: B:R.213, C:K.20 SO4.7: 5 residues within 4Å: Chain B: R.213 Chain C: R.27, V.28, R.86, R.104 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.86 Salt bridges: C:R.104, B:R.213 SO4.8: 1 residues within 4Å: Chain C: R.52 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.52 SO4.9: 4 residues within 4Å: Chain A: K.20 Chain C: S.192, T.211, R.213 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.192 Salt bridges: C:R.213, A:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gangwar, S.P. et al., Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges. Neuron (2017)

Release Date

2017-07-05

Peptides

MAM domain-containing glycosylphosphatidylinositol anchor protein 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

MAM domain-containing glycosylphosphatidylinositol anchor protein 1

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