SMTL ID : 5v60.1

Phospho-ERK2 bound to AMP-PCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 20 residues within 4Å: Chain A: I.27, E.29, G.30, V.35, A.48, K.50, I.80, Q.101, D.102, L.103, M.104, D.107, K.110, D.145, S.149, N.150, L.152, D.163 Ligands: MG.8, MG.9 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.50, A:D.102, A:M.104, A:D.107, A:D.145 Water bridges: A:R.63, A:K.147, A:K.147, A:K.147, A:S.149, A:N.150 Salt bridges: A:K.50

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.124, T.156, Y.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.156, A:Y.312 GOL.3: 5 residues within 4Å: Chain A: L.111, Q.115, N.154, T.155, C.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.115 GOL.4: 2 residues within 4Å: Chain A: L.230, Y.259 No protein-ligand interaction detected (PLIP) GOL.5: 2 residues within 4Å: Chain A: F.179, F.327 No protein-ligand interaction detected (PLIP) GOL.6: 1 residues within 4Å: Chain A: H.116 No protein-ligand interaction detected (PLIP) GOL.7: 4 residues within 4Å: Chain A: E.77, Y.124, R.131, D.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.317

2 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 4 residues within 4Å: Chain A: N.150, D.163 Ligands: ACP.1, MG.9 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.163, H2O.1, H2O.2 MG.9: 3 residues within 4Å: Chain A: D.163 Ligands: ACP.1, MG.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.163, A:D.163, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lechtenberg, B.C. et al., Structure-Guided Strategy for the Development of Potent Bivalent ERK Inhibitors. ACS Med Chem Lett (2017)

Release Date

2017-07-26

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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