SMTL ID : 5v69.1

Crystal structure of the Middle East respiratory syndrome coronavirus papain-like protease bound to ubiquitin variant ME.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.193, C.196, C.228, C.230 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.193, A:C.196, A:C.228, A:C.230

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.89, A:K.89

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.4: 3 residues within 4Å: Chain A: A.59, D.60, P.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.59 PGO.5: 8 residues within 4Å: Chain A: P.76, V.77, D.78, F.81, R.84, A.156, Y.157, N.159 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.78, A:D.78, A:D.78, A:R.84, A:A.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Potent and selective inhibition of pathogenic viruses by engineered ubiquitin variants. PLoS Pathog. (2017)

Release Date

2017-05-10

Peptides

MERS-CoV PLpro: A
ME.4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MERS-CoV PLpro

ME.4

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