SMTL ID : 5v84.1

CECR2 in complex with Cpd6 (6-allyl-N,2-dimethyl-7-oxo-N-(1-(1-phenylethyl)piperidin-4-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4-carboxamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.56, N.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.128 Salt bridges: A:K.56 SO4.5: 2 residues within 4Å: Chain D: K.56, N.128 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.128 Salt bridges: D:K.56

4 x 96V: N,2-dimethyl-7-oxo-N-{1-[(1S)-1-phenylethyl]piperidin-4-yl}-6-(prop-2-en-1-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4- carboxamide(Non-covalent)

96V.2: 19 residues within 4Å: Chain A: W.59, P.60, F.61, V.65, D.66, Y.69, A.70, Y.73, C.112, Y.115, N.116, Y.122 Chain D: V.102, M.105, K.106, E.130, F.133, H.134, M.137 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:W.59, A:P.60, A:F.61, A:Y.69, A:A.70, A:Y.122, A:Y.122, D:K.106, D:F.133, D:H.134 Hydrogen bonds: A:D.66, A:N.116, A:N.116 Water bridges: A:D.66 pi-Stacking: A:Y.122, A:Y.122 96V.3: 17 residues within 4Å: Chain B: W.59, P.60, F.61, V.65, D.66, Y.69, A.70, C.112, Y.115, N.116, Y.122 Chain C: V.102, M.105, K.106, E.130, F.133, H.134 16 PLIP interactions: 4 interactions with chain C, 12 interactions with chain B Hydrophobic interactions: C:K.106, C:E.130, C:F.133, C:H.134, B:W.59, B:P.60, B:F.61, B:Y.69, B:Y.69, B:Y.122, B:Y.122 Hydrogen bonds: B:D.66, B:N.116, B:N.116 pi-Stacking: B:Y.122, B:Y.122 96V.4: 11 residues within 4Å: Chain C: W.59, P.60, F.61, V.65, Y.69, A.70, Y.73, C.112, Y.115, N.116, Y.122 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:P.60, C:F.61, C:Y.69, C:Y.122, C:Y.122 Hydrogen bonds: C:N.116, C:N.116 pi-Stacking: C:Y.122 96V.6: 12 residues within 4Å: Chain D: W.59, P.60, F.61, V.65, D.66, Y.69, A.70, Y.73, C.112, Y.115, N.116, Y.122 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:P.60, D:F.61, D:F.61, D:Y.69, D:Y.122, D:Y.122 Hydrogen bonds: D:D.66, D:N.116, D:N.116 pi-Stacking: D:Y.122, D:Y.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawford, T.D. et al., GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2). ACS Med Chem Lett (2017)

Release Date

2017-06-14

Peptides

Cat eye syndrome critical region protein 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cat eye syndrome critical region protein 2