SMTL ID : 5v88.1

Structure of DCN1 bound to NAcM-COV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 8ZD: N-{2-[({1-[(2R)-pentan-2-yl]piperidin-4-yl}{[3-(trifluoromethyl)phenyl]carbamoyl}amino)methyl]phenyl}propanamide(Covalent)

8ZD.1: 19 residues within 4Å: Chain A: I.208, I.211, Q.212, F.214, P.222, A.223, V.227, I.230, A.231, A.236, T.238, Q.239, C.240, E.241, F.242, F.289, A.305, Y.306, L.309 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.211, A:I.211, A:P.222, A:A.231, A:A.236, A:F.242, A:F.289, A:F.289, A:A.305, A:Y.306, A:L.309 Hydrogen bonds: A:Q.239 Halogen bonds: A:V.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.C. et al., Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase. Nat. Chem. Biol. (2017)

Release Date

2017-05-24

Peptides

Lysozyme,DCN1-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme,DCN1-like protein 1

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