SMTL ID : 5v8q.1

Synthesis and biological evaluation of novel selective androgen receptor modulators (SARMs): Part III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.106, K.107 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.106 GOL.2: 5 residues within 4Å: Chain A: S.26, F.27, K.107, R.109 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.27, A:R.109 Water bridges: A:A.28, A:K.107 GOL.3: 4 residues within 4Å: Chain A: I.10, P.12, H.44, K.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.10, A:H.44, A:H.44

1 x 97A: 4-[(2S,3S)-2-ethyl-3-hydroxy-5-oxopyrrolidin-1-yl]-2-(trifluoromethyl)benzonitrile(Non-covalent)

97A.4: 16 residues within 4Å: Chain A: L.31, L.34, N.35, L.37, W.71, M.72, M.75, V.76, M.79, R.82, F.94, M.110, M.117, L.203, T.207, M.225 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.34, A:W.71, A:F.94, A:F.94, A:T.207 Hydrogen bonds: A:R.82 Halogen bonds: A:M.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aikawa, K. et al., Synthesis and biological evaluation of novel selective androgen receptor modulators (SARMs) Part III: Discovery of 4-(5-oxopyrrolidine-1-yl)benzonitrile derivative 2f as a clinical candidate. Bioorg. Med. Chem. (2017)

Release Date

2017-05-24

Peptides

Androgen receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Androgen receptor